PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.003G207700.1
Common NamePHAVU_003G207700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 1496aa    MW: 170031 Da    PI: 9.1831
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.003G207700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0004813801405123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                          y+C    C++sF +k +L +H r+ +
  Phvul.003G207700.1 1380 YQCDieGCTMSFGSKQELLQHKRNiC 1405
                          99********************9877 PP

2zf-C2H2130.0003114051427323
                          ET..TTTEEESSHHHHHHHHHHT CS
             zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                          Cp   Cgk F ++ +L++H r+H
  Phvul.003G207700.1 1405 CPvkGCGKNFFSHKYLVQHRRVH 1427
                          9999*****************99 PP

3zf-C2H211.80.0007314631489123
                          EEET..TTTEEESSHHHHHHHHHH..T CS
             zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                          y+C    Cg++F+  s++ rH r+  H
  Phvul.003G207700.1 1463 YVCAepGCGQTFRFVSDFSRHKRKtgH 1489
                          899999****************99666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005458.7E-191657IPR003349JmjN domain
PROSITE profilePS5118314.3681758IPR003349JmjN domain
PfamPF023754.7E-151851IPR003349JmjN domain
SuperFamilySSF511971.92E-26103151No hitNo description
SMARTSM005583.5E-48164333IPR003347JmjC domain
PROSITE profilePS5118434.172164333IPR003347JmjC domain
SuperFamilySSF511971.92E-26182338No hitNo description
PfamPF023734.2E-36197316IPR003347JmjC domain
Gene3DG3DSA:3.30.160.601.7E-413691402IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003556.613801402IPR015880Zinc finger, C2H2-like
SMARTSM003550.01614031427IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.54914031432IPR007087Zinc finger, C2H2
SuperFamilySSF576676.35E-614031439No hitNo description
PROSITE patternPS00028014051427IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.6E-514051431IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.602.6E-814321457IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.82414331462IPR007087Zinc finger, C2H2
SMARTSM003550.001614331457IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014351457IPR007087Zinc finger, C2H2
SuperFamilySSF576672.73E-914431487No hitNo description
Gene3DG3DSA:3.30.160.602.2E-914581486IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.84514631494IPR007087Zinc finger, C2H2
SMARTSM003550.6214631489IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014651489IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1496 aa     Download sequence    Send to blast
MAGSEEVLPW LKSLPVAPEY RPTTAEFQNP IAYISKIEKE ASQYGICKII PPLPPSPKKT  60
ATANLTRSRP TFTTRQQQIG FCPRRAQPVR RRVWRSGHHY SLREFEAKAK AFHKTYLNKN  120
KPKPLELETL YWKATLDKPF SVEYANDIPG SAFSPLRASR DADYVGDTAW NMRAVSRGSD  180
SLLRFMKEEI PGVTSPMVYV AMLFSWFAWH VEDHDLHSLN YLHFGAPKTW YGVPRDAAVA  240
FEDVVRIHGY GGEINPLVTF AILGEKTTVM SPEVFVGAGI PCCRLVQNAG EFVVTFPRAY  300
HTGFSHGFNC GEAANIATPE WLRFAKDAAI RRASINYPPM VSHFQLLYDL GLAFCSRIPG  360
GIRAEPRSSR LKYKRNGEGE TVIKELFVQD VVENNDLLHT LSKGSAIVLL PRSSSDFSVC  420
SKLRVGSQQL KVNPDFSLNV YDYERMDSPD FISDDLMFNR NHGIKQVKSF YSVKEKFVTL  480
CEKNRILPFS SDGNIYPSSS KTLQGDSEKE TDQGDGLSDQ RLFSCVTCGI LSFSCVAIVQ  540
PREPAATYLM SADCSFFNDW IVGSGVTSNK FANAHEDASI PKPRTYTVTH LVDNAGWTKQ  600
YAQHDSNGVP VQSEALNSGR DKGNTALALL ASAYGNSSDS EEDQGRLDIA LDGDELNVIN  660
HPSTNGSQEM SSMPSHFKDP HASPMVRVIG LDKEDDIHSR RMDNYEYYMH KRVEHIMTPF  720
DYSVKSEDLD NTSGVAFRNT RAVPHLSLNR SQDTHTDEDS SRMHIFCLEH AVEAEQQLRP  780
IGGAHILLLC HPDYPKIEAE AKIVAEELRI GYTWKNTIYR QANREDEVRI QSALDSEEAI  840
PGNGDWAVKL GINLFYSANL SRSALYVKQI PYNSVIYKAF GQSSPASSPT EPKVYQRRTN  900
KQKKVVAGKW CGKVWMSNQV HPLLAKRDFE DVENETSLHG WPLPDDEKIE RSVSNHKSNT  960
STRKSGKKWK KSVQKGGTWE ESFSERDWLS DNSIEEKSNK YRRRILGSKQ TRHIERDDTT  1020
SQGDYSPLPH HKKPISKHSE SSGNDAVSDD SCIQHRRKAN TNEAKFVGGD VFSDDTMDYG  1080
SDRLHRGELS NGQDAISDNS LGTCSLQLRR KTPKGKYDKY IIEEDMISDD QSEVCFWKQR  1140
GNISKGRQRS LSAKNKDNRE HHRQKQQQRN LRSRQDKHLA FIGEEDVMSD DQLKDHFQKP  1200
QRSTRRSRQN KYNDKDLMDD LAKNNFYMLY RTRKRKQAKD MDEDSIDSDD LIEDIFHLQH  1260
KRTLQSKQSK SQILQPKKQT NPLHLRNKTS RPVKQGAPTL MKSKAARQAK NQSGNSKDLT  1320
LHVEEEEDGG PRTRLRKRVL EKESEGNLKE KRIKREKAKN TTAAKVSVGH AKTKDEESEY  1380
QCDIEGCTMS FGSKQELLQH KRNICPVKGC GKNFFSHKYL VQHRRVHEDD RPLKCPWKGC  1440
KMSFKWAWAR TEHIRVHTGA RPYVCAEPGC GQTFRFVSDF SRHKRKTGHA TKKNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5a1f_A2e-49153487327LYSINE-SPECIFIC DEMETHYLASE 5B, LYSINE-SPECIF
5fzb_A2e-49153487331LYSINE-SPECIFIC DEMETHYLASE 5B
5fun_A2e-49153487331LYSINE-SPECIFIC DEMETHYLASE 5B
5fpu_A2e-49153487331LYSINE-SPECIFIC DEMETHYLASE 5B
5a3w_A2e-49153487331LYSINE-SPECIFIC DEMETHYLASE 5B
5a3t_A2e-49153487331LYSINE-SPECIFIC DEMETHYLASE 5B
5a3n_A2e-49153487331LYSINE-SPECIFIC DEMETHYLASE 5B
5fpl_A2e-49153486330LYSINE-SPECIFIC DEMETHYLASE 5B, LYSINE-SPECIF
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
112311236TRKRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007155510.10.0hypothetical protein PHAVU_003G207700g
SwissprotQ9STM30.0REF6_ARATH; Lysine-specific demethylase REF6
TrEMBLV7CBG90.0V7CBG9_PHAVU; Uncharacterized protein
STRINGGLYMA04G36630.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56483250
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6